Core Collection

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Core Collection Analysis

  • Genotypic Data :
    Input file
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    • Coverage(%) :
    • Delta :
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    [Note] Format of the input genotype file
    • Line 1: Header line. Tab delimited column names.
    • That is, column name for probe or variant ID, sample ID #1, sample ID #2, .... , sample ID #N.


    • Line 2 ~ Line M: Genotype lines.
    • The first column is variant ID

      The 2nd column is the genotypes of the sample #1.

      The 3rd column is the genotypes of the sample #2.

      The (N+1)th column is the genotype of the sample #N.


    • A genotype data must be an integer value for each variation of a sample.
    • It is one of the 0, 1, and 2. Each integer means:

      0 = AA genotype,

      1 = AB genotype,

      2 = BB genotype.


    • Please, refer the example input genotype data provided above for the test run.